PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 98831
Common NameSELMODRAFT_98831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 158aa    MW: 17733.9 Da    PI: 8.3134
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
98831genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.37.6e-086391755
    AP2 17 AeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
           A +rd      + k+++lg f+ta  Aa+a+++a+ k++g
  98831  6 AICRD------CgKQVYLGGFDTAHSAARAYDKAAIKFRG 39
           66788......55************************998 PP

2AP241.92.6e-1382132155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
            s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ + +g
  98831  82 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDRAAIRCNG 132
            79********.7******5553..2.26**********99**********98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.482147IPR001471AP2/ERF domain
SMARTSM003805.3E-11553IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-101148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-121248IPR001471AP2/ERF domain
CDDcd000184.51E-141246No hitNo description
CDDcd000184.15E-2582142No hitNo description
SuperFamilySSF541711.96E-1782141IPR016177DNA-binding domain
PfamPF008475.0E-982132IPR001471AP2/ERF domain
SMARTSM003801.1E-3283146IPR001471AP2/ERF domain
PROSITE profilePS5103215.10683140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-1683140IPR001471AP2/ERF domain
PRINTSPR003674.5E-68495IPR001471AP2/ERF domain
PRINTSPR003674.5E-6122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MFFLVAICRD CGKQVYLGGF DTAHSAARAY DKAAIKFRGL DADINFSLSD YEDDIRQMAH  60
LSKEEFIHIL RRQSTGFSRG SSKFRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEVEAA  120
RAYDRAAIRC NGRDAVTNFD PSSYEKEGHT EGSGTYT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002973422.11e-114hypothetical protein SELMODRAFT_98831
SwissprotP479273e-79AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLD8RQ521e-114D8RQ52_SELML; Putative uncharacterized protein
STRINGEFJ257961e-113(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-80AP2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]